PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.5EF4H
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C2H2
Protein Properties Length: 75aa    MW: 9118.91 Da    PI: 11.0805
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.5EF4HgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.30.000513154223
                 EET..TTTEEESSHHHHHHHHHHT CS
      zf-C2H2  2 kCp..dCgksFsrksnLkrHirtH 23
                 kCp   C+++F+     + Hir+H
  Aradu.5EF4H 31 KCPwkGCKMTFKWAWARTEHIRVH 54
                 89********************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.58E-121661No hitNo description
Gene3DG3DSA:3.30.160.607.2E-121757IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00143054IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.7413059IPR007087Zinc finger, C2H2
PROSITE patternPS0002803254IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 75 aa     Download sequence    Send to blast
MELLPIITVM LGLLRFLSQH RRVHEDDRPL KCPWKGCKMT FKWAWARTEH IRVHTGARPY  60
VLKIRYFESQ KKKKN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2353404e-36AC235340.1 Glycine max strain Williams 82 clone GM_WBb0086A04, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004301036.17e-28PREDICTED: lysine-specific demethylase REF6
RefseqXP_015954626.17e-28PREDICTED: lysine-specific demethylase REF6
RefseqXP_016191570.18e-28PREDICTED: lysine-specific demethylase REF6
SwissprotQ9STM33e-28REF6_ARATH; Lysine-specific demethylase REF6
TrEMBLM5WEB02e-27M5WEB0_PRUPE; Uncharacterized protein (Fragment)
STRINGGLYMA04G36630.15e-27(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.11e-29relative of early flowering 6